Publications

Kasatkina, Ludmila A., Chenshuo Ma, Huaxin Sheng, Matthew Lowerison, Luca Menozzi, Mikhail Baloban, Yuqi Tang, et al. “Deep-tissue high-sensitivity multimodal imaging and optogenetic manipulation enabled by biliverdin reductase knockout.” Nat Commun 16, no. 1 (July 14, 2025): 6469. https://doi.org/10.1038/s41467-025-61532-4.

Cho, Soon-Woo, and Junjie Yao. “A duet: Seeing and hearing the brain in action.” Science Advances 11, no. 30 (July 2025): eadz6780. https://doi.org/10.1126/sciadv.adz6780.

Brøndsted, Frederik, Julia L. McAfee, Jerimiah D. Moore, Harry R. Shield, Luca Menozzi, Xinqi Zhou, Yuan Fang, et al. “Acoustic loudness factor as an experimental parameter for benchmarking small molecule photoacoustic probes.” Nature Communications 16, no. 1 (April 2025): 3779. https://doi.org/10.1038/s41467-025-59121-6.

Tang, Yuqi, Nanchao Wang, Zhijie Dong, Matthew Lowerison, Angela Del Aguila, Natalie Johnston, Tri Vu, et al. “Non-Invasive Deep-Brain Imaging With 3D Integrated Photoacoustic Tomography and Ultrasound Localization Microscopy (3D-PAULM).” IEEE Trans Med Imaging 44, no. 2 (February 2025): 994–1004. https://doi.org/10.1109/TMI.2024.3477317.

Menozzi, Luca, Tri Vu, Aidan J. Canning, Harshal Rawtani, Carlos Taboada, Marie Elise Abi Antoun, Chenshuo Ma, et al. “Three-dimensional diffractive acoustic tomography.” Nat Commun 16, no. 1 (January 29, 2025): 1149. https://doi.org/10.1038/s41467-025-56435-3.

Miller, D. A., Y. Xu, R. Highland, V. T. Nguyen, W. J. Brown, G. Hong, J. Yao, and A. Wax. “Enhanced penetration depth in optical coherence tomography and photoacoustic microscopy in vivo enabled by absorbing dye molecules.” Optica 12, no. 1 (January 20, 2025): 24–30. https://doi.org/10.1364/OPTICA.546779.

Yang, J. J., S. W. Cho, and J. Yao. “Eavesdrop at Clinical Depths: Deep Photoacoustic Imaging with Internal Light Illumination.” Advanced Devices and Instrumentation 6 (January 1, 2025). https://doi.org/10.34133/adi.0100.

Li, Daiwei, and Junjie Yao. “Tracking Liver Fibrosis with Photoacoustic Microscopy.” Radiology 314, no. 1 (January 2025): e243855. https://doi.org/10.1148/radiol.243855.

Li, Daiwei, Nanchao Wang, Mucong Li, Arpit Mishra, Yuqi Tang, Tri Vu, Gaoming Xiang, et al. “Three-Dimensional Super-Resolution Passive Cavitation Mapping in Laser Lithotripsy.” IEEE Trans Ultrason Ferroelectr Freq Control 71, no. 12: Breaking the Resolution Barrier in Ultrasound (December 2024): 1690–1700. https://doi.org/10.1109/TUFFC.2024.3443781.

Wang, Nanchao, and Junjie Yao. “Sound Out the Deep Clarity: Super-Resolution Photoacoustic Imaging at Depths.” IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control 71, no. 12: Breaking the Resolution Barrier in Ultrasound (December 2024): 1801–13. https://doi.org/10.1109/tuffc.2024.3451986.

Lv, Jing, Hengrong Lan, Aoji Qin, Tong Sun, Dan Shao, Fei Gao, Junjie Yao, Kamran Avanaki, and Liming Nie. “Dynamic synthetic-scanning photoacoustic tracking monitors hepatic and renal clearance pathway of exogeneous probes in vivo.” Light, Science & Applications 13, no. 1 (October 2024): 304. https://doi.org/10.1038/s41377-024-01644-6.

Yao, Rui, Anthony DiSpirito, Hongje Jang, Colton Thomas McGarraugh, Van Tu Nguyen, Lingyan Shi, and Junjie Yao. “Virtual-point-based deconvolution for optical-resolution photoacoustic microscopy.” Journal of Biophotonics 17, no. 8 (August 2024): e202400078. https://doi.org/10.1002/jbio.202400078.

Mu, Xuan, Chenshuo Ma, Xuan Mei, Junlong Liao, Rebecca Bojar, Sizhe Kuang, Qiangzhou Rong, Junjie Yao, and Yu Shrike Zhang. “On-demand expansion fluorescence and photoacoustic microscopy (ExFLPAM).” Photoacoustics 38 (August 2024): 100610. https://doi.org/10.1016/j.pacs.2024.100610.

Maharjan, Sushila, Chenshuo Ma, Bibhor Singh, Heemin Kang, Gorka Orive, Junjie Yao, and Yu Shrike Zhang. “Advanced 3D imaging and organoid bioprinting for biomedical research and therapeutic applications.” Advanced Drug Delivery Reviews 208 (May 2024): 115237. https://doi.org/10.1016/j.addr.2024.115237.

Epstein, Adrian A., Sara N. Janos, Luca Menozzi, Kelly Pegram, Vaibhav Jain, Logan C. Bisset, Joseph T. Davis, et al. “Subventricular zone stem cell niche injury is associated with intestinal perforation in preterm infants and predicts future motor impairment.” Cell Stem Cell 31, no. 4 (April 4, 2024): 467-483.e6. https://doi.org/10.1016/j.stem.2024.03.001.

Zhu, Xiaoyi, Qiang Huang, Laiming Jiang, Van-Tu Nguyen, Tri Vu, Garth Devlin, Jabbar Shaima, et al. “Longitudinal intravital imaging of mouse placenta.” Sci Adv 10, no. 12 (March 22, 2024): eadk1278. https://doi.org/10.1126/sciadv.adk1278.

Zhang, Wenxu, Yajuan Li, Anthony A. Fung, Zhi Li, Hongje Jang, Honghao Zha, Xiaoping Chen, et al. “Multi-molecular hyperspectral PRM-SRS microscopy.” Nat Commun 15, no. 1 (February 21, 2024): 1599. https://doi.org/10.1038/s41467-024-45576-6.

Vu, Tri, Paul Klippel, Aidan J. Canning, Chenshuo Ma, Huijuan Zhang, Ludmila A. Kasatkina, Yuqi Tang, et al. “On the Importance of Low-Frequency Signals in Functional and Molecular Photoacoustic Computed Tomography.” IEEE Trans Med Imaging 43, no. 2 (February 2024): 771–83. https://doi.org/10.1109/TMI.2023.3320668.

Vu, Tri, Paul Klippel, Aidan J. Canning, Chenshuo Ma, Huijuan Zhang, Ludmila A. Kasatkina, Yuqi Tang, et al. “On the Importance of Low-Frequency Signals in Functional and Molecular Photoacoustic Computed Tomography.” IEEE Transactions on Medical Imaging 43, no. 2 (February 2024): 771–83. https://doi.org/10.1109/tmi.2023.3320668.

Rong, Q., L. Humayun, and J. Yao. “Photoacoustic Microscopy.” In Biomedical Photoacoustics Technology and Applications, 3–74, 2024. https://doi.org/10.1007/978-3-031-61411-8_1.

Cho, Soon-Woo, Van Tu Nguyen, Anthony DiSpirito, Joseph Yang, Chang-Seok Kim, and Junjie Yao. “Sounding out the dynamics: a concise review of high-speed photoacoustic microscopy.” Journal of Biomedical Optics 29, no. Suppl 1 (January 2024): S11521. https://doi.org/10.1117/1.jbo.29.s1.s11521.

Lin, L., and J. Yao. “Photoacoustic imaging.” In Transpathology Molecular Imaging Based Pathology, 81–94, 2024. https://doi.org/10.1016/B978-0-323-95223-1.00002-3.

Xiang, Gaoming, Junqin Chen, Derek Ho, Georgy Sankin, Xuning Zhao, Yangyuanchen Liu, Kevin Wang, John Dolbow, Junjie Yao, and Pei Zhong. “Shock waves generated by toroidal bubble collapse are imperative for kidney stone dusting during Holmium:YAG laser lithotripsy.” Ultrasonics Sonochemistry 101 (December 2023): 106649. https://doi.org/10.1016/j.ultsonch.2023.106649.

Kuang, Xiao, Qiangzhou Rong, Saud Belal, Tri Vu, Alice M. López López, Nanchao Wang, Mehmet Onur Arıcan, et al. “Self-enhancing sono-inks enable deep-penetration acoustic volumetric printing.” Science (New York, N.Y.) 382, no. 6675 (December 2023): 1148–55. https://doi.org/10.1126/science.adi1563.

Lee, Youngseop, Qiangzhou Rong, Ki-Hee Song, David A. Czaplewski, Hao F. Zhang, Junjie Yao, and Cheng Sun. “Theoretical and experimental study on the detection limit of the micro-ring resonator based ultrasound point detectors.” Photoacoustics 34 (December 2023): 100574. https://doi.org/10.1016/j.pacs.2023.100574.